ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs260461 dbSNP Ensembl
Location Chr19:58770883(Fwd)
Variant Alleles G/A
Ancestral Allele G
Functional Annotation 3_prime_UTR_variant; NMD_transcript_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000596677)
NMD_transcript_variant(ENST00000596677; ENST00000600029)
intron_variant(ENST00000599227; ENST00000415203; ENST00000600044; ENST00000594384; ENST00000596652; ENST00000600220; ENST00000596929; ENST00000595981; ENST00000599953; ENST00000269829; ENST00000598880; ENST00000600029; ENST00000596825)
nc_transcript_variant(ENST00000597230; ENST00000598880)
non_coding_exon_variant(ENST00000597230)
No. of Studies 1 (significant: 0; non-significant: 0; trend: 1)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Lasky-Su J, 2008 P-value=8.38E-06 under Dominant model for FBAT-PC all sympto...... P-value=8.38E-06 under Dominant model for FBAT-PC all symptoms More... association finding with P-value association finding with P-value Trend

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 0)


SNPs in LD with rs260461 (count: 13) View in gBrowse (chr19:58753937..58783027 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 13)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014