ADHDgene Database

SNP Report

Basic Info

Name	rs4806874 dbSNP Ensembl
Location	Chr19:2738352(Fwd)
Variant Alleles	A/G
Ancestral Allele	G
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000586572; ENST00000590875; ENST00000269740; ENST00000455372; ENST00000589166; ENST00000545664; ENST00000589363) nc_transcript_variant(ENST00000590875)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Weber H, 2011	G/A		Nominal P-value=0.788 Nominal P-value=0.788	associated with ADHD at nominal level associated with ADHD at nominal level	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
SLC39A3	solute carrier family 39 (zinc transporter), member 3	19p13.3	1(0/1/0)

SNPs in LD with rs4806874 (count: 16) View in gBrowse (chr19:2726199..2782368 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

rs_ID	Functional Annotation	r²[population]
rs10415622	intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 0.954[CHD]; 0.977[GIH]; 1.0[JPT]; 1.0[LWK]; 0.982[MKK]; 1.0[TSI]; 1.0[YRI]
rs1860938	downstream_gene_variant; intron_variant; upstream_gene_variant	0.842[GIH]
rs2302490	upstream_gene_variant	0.916[ASW]; 1.0[CEU]; 1.0[CHB]; 0.93[CHD]; 0.977[GIH]; 1.0[JPT]; 1.0[LWK]; 0.952[MEX]; 0.964[MKK]; 0.975[TSI]; 1.0[YRI]
rs7008	3_prime_UTR_variant; downstream_gene_variant	0.834[GIH]
rs8109943		0.952[CHB]; 1.0[JPT]
rs1736188	intron_variant; nc_transcript_variant; upstream_gene_variant	0.864[GIH]
rs7252598		0.915[ASW]; 0.953[CEU]; 1.0[CHB]; 0.954[CHD]; 0.977[GIH]; 0.952[JPT]; 0.952[MEX]; 0.824[MKK]; 0.975[TSI]
rs7257863		0.952[CHB]; 0.928[CHD]; 1.0[JPT]
rs759073	downstream_gene_variant; intron_variant; synonymous_variant; upstream_gene_variant	0.916[ASW]
rs10407667	downstream_gene_variant; intron_variant; upstream_gene_variant	1.0[ASW]; 0.949[CEU]; 0.815[GIH]; 0.811[MEX]; 0.912[MKK]; 1.0[YRI]
rs7255506		0.936[YRI]
rs4807325	downstream_gene_variant; intron_variant; upstream_gene_variant	0.864[GIH]
rs1640262	intron_variant; nc_transcript_variant	0.842[GIH]
rs759071	downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[ASW]; 0.908[CEU]; 0.858[MEX]; 0.942[YRI]
rs10409851	downstream_gene_variant; intron_variant; upstream_gene_variant	0.817[CEU]; 0.858[MEX]
rs2110118	downstream_gene_variant; intron_variant; upstream_gene_variant	0.864[GIH]